Project Data Window

The Project Data window appears once a project has been created or opened. This window is used to access the majority of MetaOmGraph's functions. Each aspect of the window is described below.

Data Table	Displays the row identifiers in the selected list. The data may be sorted by clicking the table headers.
Filter field	If the filter field contains any text, the data table will only display rows which contain the text. Mutliple filters can be applied by separating search terms with a semicolon (;). For example, if the row identifiers contain pathway information from MetNetDB, typing `calvin cycle;acetyl-coa biotin` will cause the data table to display only genes from the Calvin Cycle and Acetyl-CoA Biotin Network pathways.
Filter-to-list button	Creates a new list that contains the rows matched by the current filter. This button is only available if there is text in the filter field, and the filter matches at least one row.
Plot button	Used for creating plots of the project data. Clicking this button will display a menu with the following choices: `Selected Rows Only`: Creates a plot containing data from the rows highlighted in the data table. `Filtered List`: Creates a plot containing data from the rows displayed by the current filter. This option is only available if there is text in the filter field, and if the filter matches at least one row. `Entire List`: Plots every row in the selected list.
Correlation button	Displays the correlation menu, used for calculating correlations of the selected row with the other rows in the active list. If multiple rows are selected, the first (or highest) selected row will be used as the "base" data. See the correlation help page for more information on this feature.
Report button	Finds all columns in which the selected row is greater than a given value.
Info button	If the selected rows contain arabidopsis gene identifiers (locus IDs, or affymetrix 8k/25k IDs), this button can be used to connect to an external database for more information on the selected genes. Clicking this button will display a menu with the following choices: `AtGeneSearch`: Connects to AtGeneSearch (http://metnetdb.org/AtGeneSearch/) to retrieve infromation from MetNetDB on the selected genes. Any number of any type of gene ID can be searched. `TAIR`: Displays the TAIR (http://www.arabidopsis.org/) page for the first highlighted locus ID.

Lists	Lists allow MetaOmGraph to work with subsets of data. Correlations will only consider rows in the selected list.
New List button	Create a new list. Lists can be created manually, or by pasting a list of identifiers.
Edit List button	Edit the selected list. Used for adding or removing rows from the list.
Rename List button	Renames the selected list.
Delete List button	Deletes the selected list.