Download FCModeler

Self-installing FCModeler version 2.1 : Self-installing version for windows 2000 and XP; requires the Java 2 SDK, version 1.4.1 or above. (January 9, 2006)

MacOS FCModeler Version 2.1 : Self-installing disk image for MacOS. (April 19, 2006)

NEW FEATURES of version 2.1 release!

1. The text mining program PathBinder has been integrated directly into FCModeler, just click on the nodes in FCModeler to bring up a literature search
2. Capabilities to modify (delete or add nodes and edges) the graphs
3. Smooth integration of FCModeler with R. Graphical user interfaces (GUI) R scripts enable the user to easily
   • View animations on the graphs
   • View expression profiles of microarray, proteomics and metabolomics data
   • Basic processing of metabolomics, proteomics and microarray datasets
   Users can also write their own R scripts for custom data analysis.

Coming features

• More sophisticated data processing(e.g., different clustering algorithms), genetic network modeling and inference algorithms, graph operation algorithms will be integrated with FCModeler through R. As methods are validated, GUIs will be created. (ongoing research)

Current bugs to be solved very soon

• Saving graph images using three different options: "Save visible graph" (the graph we see in the window), "Save selected graph" and "Save whole graph" (Including the graph shown in the window, and the unseen parts). At present, only "Save visible graph" works.

• Java documentation of code
• FCModeler layout programs (Linux) (Mac)
• FCModeler User's Manual
• FCModeler to R Manual

Please send us your comments

Note: This software uses the dot layout routine from the graphviz opensource software developed at AT&T labs (http://www.research.att.com/sw/tools/graphviz/) and the diva information software infrastructure. (http://www.gigascale.org/diva/)