Functional Genomics Tools

MetNet is software to visualize, explore, statistically analyze and model transcriptomics, proteomics and metabolomics data in the context of a growing metabolic and regulatory network map of Arabidopsis, Soybean, and other species.

National Science Foundation
MetNet: Integrated Software for Arabidopsis Systems Biology
Wurtele (PI), Berleant, Cook, Dickerson, Miller

           PMR

Plant and Microbial Metabolomics Resource

           MetNet Online

Search the MetNet database from your browser

           MetaVenn

Identify inclusion relations between multiple datasets and extracts shared members.

           MetNet Plugin for            CellDesigner

View and editing pathways from MetNetDB within Cell Designer

           MetNet Plugins for            Cytoscape

Displays and models 'omics data with MetNetDB map

           exploRase

Statistical analysis and visualization of 'omics data with MetNetDB map

           PathBinder

Textmining for MedLine and biological literature

           AtGeneSearch

Gene annotations

           MetaOmGraph

Analyse patterns in public gene expression data

           PubMed Assistant

A Biologist-Friendly Interface for Enhanced PubMed Search

           MetNetDB

Curator tool/database of a regulatory and metabolic network of Arabidopsis